The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0746
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 51834
End posion on genome 51918
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
acaatcgcgc
tRNA gene sequence 
GCAGGGATAGCCAAGTTTGGCCAACGGCGCAGCGTTCAGGGCGCTGTCCCGTAGGGGTCC
GCAGGTTCAAATCCTGCTCCCTGCActt
Downstream region at tRNA end position 
ttcccacaac
Secondary structure (Cloverleaf model)
>At0746	Leu	CAG
                   c      Actt ttcccacaac
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C G T C C     A
    T T G A        A      | | | | |     A
  T         A C C G       G C A G G     C
  G           | | |                 T T
  G         C G G C
    C C A A        G     TCCCGTAGGGGTCC
                    C - G
                    A - T
                    G - C
                    C - G
                    G - C
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGATAGCCAAGTTTGGCCAACGGCGCAGCGTTCAGGGCGCTGTCCCGTAGGGGTCC
GCAGGTTCAAATCCTGCTCCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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