The detailed information of tRNA gene sequence


Sequence ID>WENV170388074
Genome IDCETZ01043485
Search identical group
Phylum/Class[CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
Species
Start position on genome 275
End posion on genome 180
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
tagcattatg
tRNA gene sequence 
GGGAATGATTGCGCGGCTGGTGCCCGCCGCGGTCTTCAAAACCGTTGTCCCGGTGCTGAA
TCGGGAGCTGGGTTCGATTCCCAGGCGTTCCCGCCA
Downstream region at tRNA end position 
tttaggaatc
Secondary structure (Cloverleaf model)
>WENV170388074	SeC	TCA
                   g      GCCA tttaggaatc
                     G - C
                     G - C
                     G - C
                     A - T
                     A - T
                     T + G
                     G - C
                     A   G          T T
                    T     G A C C C     A
      C G G        T      | | | | |     G
    T       C G C G       C T G G G     C
    G         | | |                 T T
    G       C C G C
      T G C        C     TGTCCCGGTGCTGAATCGGGAG
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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