The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0793
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 115152
End posion on genome 115224
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
tagggtgcga
tRNA gene sequence 
GCCGCCATAGCTCAGTTGGTAGAGCACGTGGTTGTTACCCACGTTGTCCCAGGTTCGAGC
CCTGGTGGCGGCGtca
Downstream region at tRNA end position 
cttcctcttc
Secondary structure (Cloverleaf model)
>At0793	Asn	GTT
                   a      Gtca cttcctcttc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T          C G
                    T     G G T C C     A
      T G A        A      | | | | |     G
    T       C T C G       C C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     TTGTC
                    C - G
                    G - C
                    T - A
                    G - C
                    G - C
                  T       C
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCATAGCTCAGTTGGTAGAGCACGTGGTTGTTACCCACGTTGTCCCAGGTTCGAGC
CCTGGTGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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