The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0806
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1228868
End posion on genome 1228942
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
gatgacgcga
tRNA gene sequence 
GGGTTGGTGGTCTAGTCAGGCTATGACACCTCCTTGACATGGAGGAGGTCGGCGGTTCAA
ATCCGCCCCAACCCAttc
Downstream region at tRNA end position 
acgccgcgtt
Secondary structure (Cloverleaf model)
>At0806	Val	GAC
                   a      Attc acgccgcgtt
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     G - C          T A
                    T     C C G C C     A
    C T G A        G      | | | | |     A
  A         T C T G       G G C G G     C
  G           | | |                 T T
  G         T G A C
    C T A          A     AGGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTTGGTGGTCTAGTCAGGCTATGACACCTCCTTGACATGGAGGAGGTCGGCGGTTCAA
ATCCGCCCCAACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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