The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0814
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1880755
End posion on genome 1880830
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gtagtcgtgt
tRNA gene sequence 
GCCAAGGTGGCAGAGTTCGGCCTAACGCGGCGGCCTGCAGAGCCGCTCATCGCCGGTTCA
AATCCGGCCCTTGGCTttt
Downstream region at tRNA end position 
cagcagcgag
Secondary structure (Cloverleaf model)
>At0814	Cys	GCA
                   t      Tttt cagcagcgag
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     C G G C C     A
    T T G A        G      | | | | |     A
  C         G A C G       G C C G G     C
  G             | |                 T T
  G         A C G C
    C C T A        G     TCATC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTGGCAGAGTTCGGCCTAACGCGGCGGCCTGCAGAGCCGCTCATCGCCGGTTCA
AATCCGGCCCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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