The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0815
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 1917362
End posion on genome 1917434
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
gtgcacgtgt
tRNA gene sequence 
GGGCGCGTAGCTCAGCGGACAGAGCACTTGGTTCCGGACCAAGATGTCAGGGGTTCAAAT
CCCTTCGCGCCCGtgt
Downstream region at tRNA end position 
tctgcgttcc
Secondary structure (Cloverleaf model)
>At0815	Arg	CCG
                   t      Gtgt tctgcgttcc
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     G - C          T A
                    T     T T C C C     A
      C G A        A      | + | | |     A
    G       C T C G       A G G G G     C
    G       | | | |                 T T
    A       G A G C
      C A          A     ATGTC
                    C - G
                    T - A
                    T - A
                    G - C
                    G - C
                  T       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCGTAGCTCAGCGGACAGAGCACTTGGTTCCGGACCAAGATGTCAGGGGTTCAAAT
CCCTTCGCGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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