The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At0859 |
Genome ID | AM180088 |
Phylum/Class | Euryarchaeota |
Species | Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088] |
Start position on genome
|
2357258
|
End posion on genome
|
2357330
|
Amino Acid
|
Asp
|
Anticodon
|
GTC
|
Upstream region at tRNA start position
|
aaacattgaa
|
tRNA gene sequence
|
GCCCGGGTGGTGTAGTGGCCGATCATATGACCCTGTCACGGTCGTGACGCGGGTTCAAAT CCCGCCTCGGGCGttc
|
Downstream region at tRNA end position
|
cacgttttga
|
Secondary structure (Cloverleaf model) | >At0859 Asp GTC
a Gttc cacgttttga
G - C
C - G
C - G
C - G
G - C
G + T
G - C T A
T C G C C C A
T G A G | | | | | A
G T G T G G C G G G C
G | | + T T
C T C A T
C G A A TGAC
T + G
G - C
A - T
C - G
C - G
C C
T A
G T C
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GCCCGGGTGGTGTAGTGGCCGATCATATGACCCTGTCACGGTCGTGACGCGGGTTCAAAT CCCGCCTCGGGCG |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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