The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0870
Genome IDAM180088
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
Start position on genome 725632
End posion on genome 725562
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
atagcagcat
tRNA gene sequence 
GCGCTGGTGGTCTAGTGGTATGACCTGAGCCTTCCAAGCTCATGACCCGGGTTCAAATCC
CGGCCGGCGCAtac
Downstream region at tRNA end position 
gatatttgtc
Secondary structure (Cloverleaf model)
>At0870	Gly	TCC
                   t      Atac gatatttgtc
                     G - C
                     C - G
                     G - C
                     C - G
                     T + G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        G      | | | | |     A
      T     T C T G       C C G G G     C
      G       | | |                 T T
      G     T G A C
        T A        C     TGAC
                    T - A
                    G - C
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCTGGTGGTCTAGTGGTATGACCTGAGCCTTCCAAGCTCATGACCCGGGTTCAAATCC
CGGCCGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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