The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0894
Genome IDCP000678
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861 [CP000678]
Start position on genome 1666301
End posion on genome 1666384
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
tatgtgtgat
tRNA gene sequence 
GCGGGGGTGGTCGAGTGGTCAAAGGCGATAGGTTGAGGGCCTATTGGGTTAGTCCCTTCG
CGGGTTCAAGTCCCGTCTCCCGCActt
Downstream region at tRNA end position 
taattaataa
Secondary structure (Cloverleaf model)
>At0894	Leu	GAG
                   t      Actt taattaataa
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T
                     G - C          T G
                    T     T G C C C     A
      T G A        G      + | | | |     A
    G       G C T G       G C G G G     C
    G         | + |                 T T
    T       A G G C
      C A A        G     TGGGTTAGTCCCTTC
                    A - T
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGGTCGAGTGGTCAAAGGCGATAGGTTGAGGGCCTATTGGGTTAGTCCCTTCG
CGGGTTCAAGTCCCGTCTCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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