The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0935
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 764021
End posion on genome 764096
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
cgtttgatgt
tRNA gene sequence 
AGCCCGGTGGTGTAGTGGCCTATCATCCGGGGCTTTGGACCCCGGGACCGCGGTTCGAAT
CCGCGCCGGGCTACCA
Downstream region at tRNA end position 
tttttatttt
Secondary structure (Cloverleaf model)
>At0935	Gln	TTG
                   t      ACCA tttttatttt
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C G C C     A
      T G A        G      | | | | |     G
    G       T G T G       C G C G G     C
    G         | | +                 T T
    C       T C A T
      C T A        C     GGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTGGTGTAGTGGCCTATCATCCGGGGCTTTGGACCCCGGGACCGCGGTTCGAAT
CCGCGCCGGGCTACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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