The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0939
Genome IDL77117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocaldococcus jannaschii DSM 2661 [L77117]
Start position on genome 863656
End posion on genome 863732
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
cacttcgtgt
tRNA gene sequence 
CCGGCGGTAGTTCAGCCTGGTAGAACGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAA
TCCGGCCCGCCGGACCA
Downstream region at tRNA end position 
tctcccattt
Secondary structure (Cloverleaf model)
>At0939	Tyr	GTA
                   t      ACCA tctcccattt
                     C - G
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C G G C C     A
      C G A        A      | | + | |     A
    C       C T T G       G C T G G     C
    T       | | | |                 T T
    G       G A A C
      G T A        G     ATGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCGGCGGTAGTTCAGCCTGGTAGAACGGCGGACTGTAGATCCGCATGTCGCTGGTTCAAA
TCCGGCCCGCCGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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