The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0995
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1042479
End posion on genome 1042408
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
agttcagtac
tRNA gene sequence 
GCCGTCGTGGCTTAGCGGTATAGCGGCTGATTCGTAATCAGCAGGCCGGGGGTTCAAATC
CCCCCGACGGCTtta
Downstream region at tRNA end position 
aatcggtgat
Secondary structure (Cloverleaf model)
>At0995	Thr	CGT
                   c      Ttta aatcggtgat
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C C C C C     A
        G A        G      | | | | |     A
      C     T T C G       G G G G G     C
      G       | | |                 T T
      G     T A G C
        T A        G     AGGCC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTCGTGGCTTAGCGGTATAGCGGCTGATTCGTAATCAGCAGGCCGGGGGTTCAAATC
CCCCCGACGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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