The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1001
Genome IDCP000300
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides burtonii DSM 6242 [CP000300]
Start position on genome 1589860
End posion on genome 1589776
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
aactcttaat
tRNA gene sequence 
GACGAGATAGCCAAGCCCGGTATGGCGCAGGATTGCTAATCCTGTGGTGCCCGGCACCTC
GGGGGTTCGAATCCCCCTCTCGTCGtcc
Downstream region at tRNA end position 
ttttatctaa
Secondary structure (Cloverleaf model)
>At1001	Ser	GCT
                   t      Gtcc ttttatctaa
                     G - C
                     A - T
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C C C C C     A
      C G A        A      | | | | |     G
    C       A C C G       G G G G G     C
    C       | | | |                 T T
    G       T G G C
      G T A        G     TGGTGCCCGGCACCTC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GACGAGATAGCCAAGCCCGGTATGGCGCAGGATTGCTAATCCTGTGGTGCCCGGCACCTC
GGGGGTTCGAATCCCCCTCTCGTCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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