The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1018
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 1293591
End posion on genome 1293663
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
cagatgaaat
tRNA gene sequence 
GCCCCCATAGCTTAGTAGGTAGAGCGACGGACTGTTAATCCGTAGGTCGCAGGTTCGAGT
CCTGCTGGGGGCGttc
Downstream region at tRNA end position 
tttttttatg
Secondary structure (Cloverleaf model)
>At1018	Asn	GTT
                   t      Gttc tttttttatg
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     C - G
                     A - T          T G
                    T     C G T C C     A
      T G A        A      | | | | |     G
    A       T T C G       G C A G G     C
    G       + | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCCATAGCTTAGTAGGTAGAGCGACGGACTGTTAATCCGTAGGTCGCAGGTTCGAGT
CCTGCTGGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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