The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1026
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 838331
End posion on genome 838258
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
atattatatt
tRNA gene sequence 
GGGCTGATAGCTCAGCTTGGGAGAGTGCCGCATTGGCTATGCGGAAGCCGCGGGTTCAAA
TCCCGCTCAGTCCAttt
Downstream region at tRNA end position 
tattttttta
Secondary structure (Cloverleaf model)
>At1026	Ala	GGC
                   t      Attt tattttttta
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     A - T          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    T       C T C G       G C G G G     C
    T       | | | +                 T T
    G       G A G T
      G G A        G     AAGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  T       A
                  T       T
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGATAGCTCAGCTTGGGAGAGTGCCGCATTGGCTATGCGGAAGCCGCGGGTTCAAA
TCCCGCTCAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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