The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1049
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 270980
End posion on genome 271052
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gattaaacgt
tRNA gene sequence 
GCGCCAGTGGTGTAGCCTGGTATCACTTTGGCCTTCCAAGCCAGTAACTCGGGTTCAAAT
CCCGACTGGCGCAttt
Downstream region at tRNA end position 
tttattttgg
Secondary structure (Cloverleaf model)
>At1049	Gly	TCC
                   t      Attt tttattttgg
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C          T A
                    T     A G C C C     A
      C G A        G      | | | | |     A
    C       T G T G       T C G G G     C
    T         | | |                 T T
    G       T C A C
      G T A        T     TAAC
                    T + G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCAGTGGTGTAGCCTGGTATCACTTTGGCCTTCCAAGCCAGTAACTCGGGTTCAAAT
CCCGACTGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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