The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1050
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 492159
End posion on genome 492232
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
aagctgaatt
tRNA gene sequence 
GGGCTGATAGCTCAGACTGGGAGAGTACCGCATTGGCTATGCGGAAGCCGCGGGTTCAAA
TCCCGCTCAGTCCAcct
Downstream region at tRNA end position 
aatttatttt
Secondary structure (Cloverleaf model)
>At1050	Ala	GGC
                   t      Acct aatttatttt
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     A - T          T A
                    T     C G C C C     A
      A G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    T       | | | +                 T T
    G       G A G T
      G G A        A     AAGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  T       A
                  T       T
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGATAGCTCAGACTGGGAGAGTACCGCATTGGCTATGCGGAAGCCGCGGGTTCAAA
TCCCGCTCAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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