The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1068
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 1130434
End posion on genome 1130350
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agttgttcgt
tRNA gene sequence 
GCGGAGATGGCCCAGCCTGGTACGGCGCGGGACTGCTAATCCCGTTACTCTCTGAGTAAC
CCGAGTTCAAATCTCGGTCTCCGCGttt
Downstream region at tRNA end position 
ctctttttac
Secondary structure (Cloverleaf model)
>At1068	Ser	GCT
                   t      Gttt ctctttttac
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     G G C T C     A
      C G A        G      | | | | |     A
    C       C C C G       C C G A G     C
    T         | | |                 T T
    G       C G G C
      G T A        G     TTACTCTCTGAGTAAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGATGGCCCAGCCTGGTACGGCGCGGGACTGCTAATCCCGTTACTCTCTGAGTAAC
CCGAGTTCAAATCTCGGTCTCCGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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