The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1105
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 573809
End posion on genome 573736
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
taggaaatgt
tRNA gene sequence 
GCCAAGGTAGTCTAGTCCGGCGAGGCAGCGGACTGCAGATCCGCTTCAGAGGGGTTCAAA
TCCCTTCCTTGGCTttt
Downstream region at tRNA end position 
tttattttgg
Secondary structure (Cloverleaf model)
>At1105	Cys	GCA
                   t      Tttt tttattttgg
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
      T G A        A      | + | | |     A
    C       T C T G       A G G G G     C
    C       | | + |                 T T
    G       A G G C
      G C G        A     TTCAG
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTAGTCTAGTCCGGCGAGGCAGCGGACTGCAGATCCGCTTCAGAGGGGTTCAAA
TCCCTTCCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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