The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1118
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 1469379
End posion on genome 1469295
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agttgttcgt
tRNA gene sequence 
GCGGAGATGGCCCAGCCTGGTACGGCGCGGGACTGCTAATCCCGTTACGCTCTGCGTAAC
CCGAGTTCAAATCTCGGTCTCCGCGttt
Downstream region at tRNA end position 
aacttttttc
Secondary structure (Cloverleaf model)
>At1118	Ser	GCT
                   t      Gttt aacttttttc
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     G G C T C     A
      C G A        G      | | | | |     A
    C       C C C G       C C G A G     C
    T         | | |                 T T
    G       C G G C
      G T A        G     TTACGCTCTGCGTAAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGATGGCCCAGCCTGGTACGGCGCGGGACTGCTAATCCCGTTACGCTCTGCGTAAC
CCGAGTTCAAATCTCGGTCTCCGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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