The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1144
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1049964
End posion on genome 1049891
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
aagctagatt
tRNA gene sequence 
GGGCTGATAGCTCAGACTGGGAGAGTGCCGCATTGGCTATGCGGATGCCGCGGGTTCAAA
TCCCGCTCAGTCCAcct
Downstream region at tRNA end position 
aatctatttt
Secondary structure (Cloverleaf model)
>At1144	Ala	GGC
                   t      Acct aatctatttt
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     A - T          T A
                    T     C G C C C     A
      A G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    T       | | | +                 T T
    G       G A G T
      G G A        G     ATGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  T       A
                  T       T
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGATAGCTCAGACTGGGAGAGTGCCGCATTGGCTATGCGGATGCCGCGGGTTCAAA
TCCCGCTCAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK