The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1178
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 435277
End posion on genome 435204
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
actgaatttg
tRNA gene sequence 
GGGCTGATAGCTCAGACTGGGAGAGTGCCGCATTGGCTATGCGGAAGCCGCGGGTTCAAA
TCCCGCTCAGTCCAttc
Downstream region at tRNA end position 
ctaaataaca
Secondary structure (Cloverleaf model)
>At1178	Ala	GGC
                   g      Attc ctaaataaca
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     A - T          T A
                    T     C G C C C     A
      A G A        A      | | | | |     A
    C       C T C G       G C G G G     C
    T       | | | +                 T T
    G       G A G T
      G G A        G     AAGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  T       A
                  T       T
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGATAGCTCAGACTGGGAGAGTGCCGCATTGGCTATGCGGAAGCCGCGGGTTCAAA
TCCCGCTCAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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