The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1237
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1382097
End posion on genome 1381987
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
agcagtcaat
tRNA gene sequence 
CCCGACTTAACTCAGATGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTTCGAAT
CCGGGAGTCGGGACCA
Downstream region at tRNA end position 
ttttcaagac
Secondary structure (Cloverleaf model)
>At1237	Tyr	GTA
                   t      ACCA ttttcaagac
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T
                     C - G
                     T - A          T A
                    T     G G G C C     A
      A G A        A      | | | | |     G
    T       C T C A       C C C G G     C
    G       | | | |                 T T
    G       G A G T
      T A          G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGACTTAACTCAGATGGTAGAGTGCGCGGCTGTAGaaagaaattaacgcctgcgggcg
tactgcgcggctACCGCGATGTCCCCGGTTCGAATCCGGGAGTCGGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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