The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1255
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1125032
End posion on genome 1125104
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
ggtgcgtcac
tRNA gene sequence 
GCCTCAGTGGCTCAGCCGGTAGAGCGTGTCCTTGGTAAGGACAAGGTCGCGAGTTCGAAT
CTCGCCTGAGGCTttc
Downstream region at tRNA end position 
tgttttgcat
Secondary structure (Cloverleaf model)
>At1255	Thr	GGT
                   c      Tttc tgttttgcat
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     A - T
                     G - C          T A
                    T     C G C T C     A
      C G A        G      | | | | |     G
    C       C T C G       G C G A G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    T - A
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCAGTGGCTCAGCCGGTAGAGCGTGTCCTTGGTAAGGACAAGGTCGCGAGTTCGAAT
CTCGCCTGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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