The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1287
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1674306
End posion on genome 1674200
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
agagcagaga
tRNA gene sequence 
CCCGCCTTAACTCAGACTGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTTCGAA
TCCGGGAGGCGGGAtcc
Downstream region at tRNA end position 
cctcgaacat
Secondary structure (Cloverleaf model)
>At1287	Tyr	GTA
                   a      Atcc cctcgaacat
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T A
                    T     G G G C C     A
      A G A        A      | | | | |     G
    C       C T C A       C C C G G     C
    T       | | | |                 T T
    G       G A G T
      G T A        G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCTTAACTCAGACTGGTAGAGTGCGCGGCTGTAGtatagtcttcgctctcgggcga
actgcgcggctACCGCGATGTCCCCGGTTCGAATCCGGGAGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK