The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1298
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 563671
End posion on genome 563760
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tgaaatgggc
tRNA gene sequence 
GCGGGGGCGCCCGAGCCTGGTCGAAGGGGGCGGACTTAAGATCCGCTGGCCGTAGGGCCG
TCCCGGGTTCAAATCCCGGCCCCCGCACCA
Downstream region at tRNA end position 
agcgagaatc
Secondary structure (Cloverleaf model)
>At1298	Leu	TAA
                   c      ACCA agcgagaatc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        G      | | | | |     A
  T         G C C C       C C G G G     C
  G           | | |                 T T
  G         A G G G
    T C G A        G     TGGCCGTAGGGCCGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGCGCCCGAGCCTGGTCGAAGGGGGCGGACTTAAGATCCGCTGGCCGTAGGGCCG
TCCCGGGTTCAAATCCCGGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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