The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1299
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 566035
End posion on genome 566125
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tgttggagaa
tRNA gene sequence 
GCCGGGGCGGCCGAGCCCGGTCCAAGGCGCGGGACTTGAGATCCCGTGGCCCGTATGGGC
CGCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Downstream region at tRNA end position 
aacccggaat
Secondary structure (Cloverleaf model)
>At1299	Ser	TGA
                   a      GCCA aacccggaat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        G      | | | | |     A
  C         G C C G       C C G G G     C
  G           | | |                 T T
  G         A G G C
    T C C A        G     TGGCCCGTATGGGCCGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGCGGCCGAGCCCGGTCCAAGGCGCGGGACTTGAGATCCCGTGGCCCGTATGGGC
CGCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK