The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1310
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1670465
End posion on genome 1670555
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tgggcaaggc
tRNA gene sequence 
GCCGGGGCGGCCGAGCCCGGTCCAAGGCGCGGGACTGCTAATCCCGTGGCCCGTATGGGC
CGCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Downstream region at tRNA end position 
acccgaaatc
Secondary structure (Cloverleaf model)
>At1310	Ser	GCT
                   c      GCCA acccgaaatc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        G      | | | | |     A
  C         G C C G       C C G G G     C
  G           | | |                 T T
  G         A G G C
    T C C A        G     TGGCCCGTATGGGCCGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGCGGCCGAGCCCGGTCCAAGGCGCGGGACTGCTAATCCCGTGGCCCGTATGGGC
CGCCCGGGTTCAAATCCCGGCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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