The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1325
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1662904
End posion on genome 1662827
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
attgggagga
tRNA gene sequence 
GGGCCCGCAGCTCAGCCTGGACAGAGCGCGGGGCTTCTAACCCCGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGCCA
Downstream region at tRNA end position 
accggaaatt
Secondary structure (Cloverleaf model)
>At1325	Arg	TCT
                   a      GCCA accggaaatt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGCAGCTCAGCCTGGACAGAGCGCGGGGCTTCTAACCCCGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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