The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1328
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 61464
End posion on genome 61536
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
tacccattga
tRNA gene sequence 
GGGCAGGTAGATCAGCTGGAAGATCGCTACCTTGGCATGGTAGAGGCCTCGGGTTCAAAT
CCCGACCTGTCCAtca
Downstream region at tRNA end position 
catagggttc
Secondary structure (Cloverleaf model)
>At1328	Ala	GGC
                   a      Atca catagggttc
                     G - C
                     G - C
                     G + T
                     C - G
                     A - T
                     G - C
                     G - C          T A
                    T     A G C C C     A
      C G A        A      | | | | |     A
    T       C T A G       T C G G G     C
    G       | | | |                 T T
    G       G A T C
      A A          G     AGGCC
                    C - G
                    T - A
                    A - T
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCAGGTAGATCAGCTGGAAGATCGCTACCTTGGCATGGTAGAGGCCTCGGGTTCAAAT
CCCGACCTGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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