The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1342
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 888219
End posion on genome 888306
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
aaagttagct
tRNA gene sequence 
GGACTCGTAGTATAGTCTGGATAGAACAGAGGCCTCCGGAGCCTCAAACCCGGGTTCGAA
TCCCGGCGGGTCCGctg
Downstream region at tRNA end position 
ctttaatttt
Secondary structure (Cloverleaf model)
>At1342	Arg	CCG
                   t      Gctg ctttaatttt
                     G - C
                     G - C
                     A - T
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C T G A        A      | | | | |     G
  T         T A T G       C C G G G     C
  G         +   | |                 T T
  G         G A A C
    A T A          A     AAAC
                    G - C
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACTCGTAGTATAGTCTGGATAGAACAGAGGCCTCCGGaggtctccggggatAGCCTCA
AACCCGGGTTCGAATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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