The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1349
Genome IDCP000477
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix thermoacetophila PT [CP000477]
Start position on genome 1483926
End posion on genome 1484011
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
aatggcgagc
tRNA gene sequence 
GCGCCGATGGTCTAGCGGTTATGACTTGGGCCTTCCAAGCCTACAACCCGGGTTCGAATC
CCGGTCGGCGCAtca
Downstream region at tRNA end position 
ctattttgca
Secondary structure (Cloverleaf model)
>At1349	Gly	TCC
                   c      Atca ctattttgca
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    G       T C T G       C C G G G     C
    G         | | |                 T T
    T       T G A C
      T A          T     CAAC
                    T - A
                    G + T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCGATGGTCTAGCGGTTATGACTTGGGCCTTCCAagcatcccgaagaaAGCCTACAA
CCCGGGTTCGAATCCCGGTCGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK