The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1485
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 1854338
End posion on genome 1854261
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
cctgctctgc
tRNA gene sequence 
GGGGCCGTAGGGTAGCCTGGTCCATCCTGCAAGGCTGGGGGTCTTGCGACCTGAGTCCAA
ATCTCAGCGGCCCCACCA
Downstream region at tRNA end position 
aacttttact
Secondary structure (Cloverleaf model)
>At1485	Pro	GGG
                   c      ACCA aacttttact
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G A C T C     A
    C C G A        A      | | | | |     A
  T         T G G G       C T G A G     C
  G           | | +                 T C
  G         T C C T
    T C C A        G     CGAC
                    C - G
                    A - T
                    A - T
                    G - C
                    G + T
                  C       G
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGGGTAGCCTGGTCCATCCTGCAAGGCTGGGGGTCTTGCGACCTGAGTCCAA
ATCTCAGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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