The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1491
Genome IDCP000099
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina barkeri [CP000099]
Start position on genome 2857628
End posion on genome 2857544
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
atttcaacct
tRNA gene sequence 
GCTGAGGTAGCCCAGCGGACTACGGCGCCGGTCTTGAAAACCGGTAGCGCTTTGCGCTAC
GGGAGTTCGAATCTCCCCCTCAGCGcct
Downstream region at tRNA end position 
aacttctcag
Secondary structure (Cloverleaf model)
>At1491	Ser	TGA
                   t      Gcct aacttctcag
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C T C     A
      C G A        A      | | | | |     G
    G       C C C G       G G G A G     C
    G         | | |                 T T
    A       C G G C
      C T A        G     TAGCGCTTTGCGCTAC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGAGGTAGCCCAGCGGACTACGGCGCCGGTCTTGAAAACCGGTAGCGCTTTGCGCTAC
GGGAGTTCGAATCTCCCCCTCAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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