The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1520
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 2560527
End posion on genome 2560614
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
aaaacacgat
tRNA gene sequence 
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGCTAGGTTGAGGGCCTAGTCTTGTAGGAGTTC
GTGGGTTCGAATCCCATCCCTCGCACCA
Downstream region at tRNA end position 
gatttcttaa
Secondary structure (Cloverleaf model)
>At1520	Leu	GAG
                   t      ACCA gatttcttaa
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T A C C C     A
    C C G A        T      + | | | |     G
  A         C C C G       G T G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTTGTAGGAGTTC
                    C - G
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCCAGCCAGGTCAAAGGCGCTAGGTTGAGGGCCTAGTCTTGTAGGAGTTC
GTGGGTTCGAATCCCATCCCTCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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