The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1538
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 1623627
End posion on genome 1623554
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
aataatgcgt
tRNA gene sequence 
GGGCCCGTAGCTTAGTCAGGCAGAGCGATGGACTCTTAATCCATAGGCCGGGGGTTCAAA
TCCCTTCGGGCCCGctg
Downstream region at tRNA end position 
atctcaaact
Secondary structure (Cloverleaf model)
>At1538	Lys	CTT
                   t      Gctg atctcaaact
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T T C C C     A
      T G A        A      + + | | |     A
    C       T T C G       G G G G G     C
    A       + | | |                 T T
    G       G A G C
      G C A        G     AGGCC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTTAGTCAGGCAGAGCGATGGACTCTTAATCCATAGGCCGGGGGTTCAAA
TCCCTTCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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