The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1549
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 3174177
End posion on genome 3174093
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
atttcaatat
tRNA gene sequence 
GCTGAGGTAGCCAAGCGGACCACGGCGCCGGTCTTGAAAACCGGTAGCGCTACGCGCTAC
GGGAGTTCGAATCTCTCCCTCAGCGtaa
Downstream region at tRNA end position 
ctttattttt
Secondary structure (Cloverleaf model)
>At1549	Ser	TGA
                   t      Gtaa ctttattttt
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C T C     A
      C G A        A      | + | | |     G
    G       A C C G       G G G A G     C
    G         | | |                 T T
    A       C G G C
      C C A        G     TAGCGCTACGCGCTAC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGAGGTAGCCAAGCGGACCACGGCGCCGGTCTTGAAAACCGGTAGCGCTACGCGCTAC
GGGAGTTCGAATCTCTCCCTCAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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