The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1567
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 855771
End posion on genome 855844
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ttcatcatat
tRNA gene sequence 
GGGCCCGTAGCTCAGACTGGGAGAGCGCCGGCTTTGCAAGCCGGAGGCCCCGGGTTCAAA
TCCCGGTGGGTCCAttt
Downstream region at tRNA end position 
acaaacatgt
Secondary structure (Cloverleaf model)
>At1567	Ala	TGC
                   t      Attt acaaacatgt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G + T          T A
                    T     G G C C C     A
      A G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        G     AGGCC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGACTGGGAGAGCGCCGGCTTTGCAAGCCGGAGGCCCCGGGTTCAAA
TCCCGGTGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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