The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1570
Genome IDCP000102
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaera stadtmanae DSM 3091 [CP000102]
Start position on genome 1289102
End posion on genome 1289185
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
ttttttatac
tRNA gene sequence 
GCGGGGGTGGTCGAGCGGTCAAAGGCGATAGGTTGAGGGCCTATTGAGGTAGTCTCTTCG
CGGGTTCGATTCCCGTCTCCCGCAttt
Downstream region at tRNA end position 
aatttcaaaa
Secondary structure (Cloverleaf model)
>At1570	Leu	GAG
                   c      Attt aatttcaaaa
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T
                     G - C          T T
                    T     T G C C C     A
      C G A        G      + | | | |     G
    G       G C T G       G C G G G     C
    G         | + |                 T T
    T       A G G C
      C A A        G     TGAGGTAGTCTCTTC
                    A - T
                    T - A
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGGTCGAGCGGTCAAAGGCGATAGGTTGAGGGCCTATTGAGGTAGTCTCTTCG
CGGGTTCGATTCCCGTCTCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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