The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1598
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 548757
End posion on genome 548830
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
taaggcgcac
tRNA gene sequence 
GGGCCTATGGTCTAGTTGGTTATGACACCGCCTTTACACGGCGGAGGTCGCCGGTTCGAA
TCCGGCTGGGCCCAtaa
Downstream region at tRNA end position 
ttttttattg
Secondary structure (Cloverleaf model)
>At1598	Val	TAC
                   c      Ataa ttttttattg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T + G
                     A - T          T A
                    T     C G G C C     A
      T G A        G      | | | | |     G
    T       T C T G       G C C G G     C
    G         | | |                 T T
    G       T G A C
      T T A        A     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCTATGGTCTAGTTGGTTATGACACCGCCTTTACACGGCGGAGGTCGCCGGTTCGAA
TCCGGCTGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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