The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1599
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 586865
End posion on genome 586936
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
tagtaaggtt
tRNA gene sequence 
GCCCCGGTAGGGTAGAGGATATCCTTGGAGCCTCCGGAGCTTTAGACCTGGGTTCAAGTC
CCAGCCGGGGCGtaa
Downstream region at tRNA end position 
atattaaagt
Secondary structure (Cloverleaf model)
>At1599	Arg	CCG
                   t      Gtaa atattaaagt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T G
                    T     G A C C C     A
      A G A        A      | | | | |     A
    G       T G G G       C T G G G     C
    G         | | +                 T T
    A       T C C T
      T A          T     AGAC
                    G + T
                    G + T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGGGTAGAGGATATCCTTGGAGCCTCCGGAGCTTTAGACCTGGGTTCAAGTC
CCAGCCGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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