The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1604
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 1122704
End posion on genome 1122775
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
tacggggcac
tRNA gene sequence 
GCCGTTGTGGCTTAGCGGTATAGCGGCTGATTCGTAATCAGCAGGTCGGGGGTTCAAGTC
CCCCCAGCGGCTcta
Downstream region at tRNA end position 
ataccgaagt
Secondary structure (Cloverleaf model)
>At1604	Thr	CGT
                   c      Tcta ataccgaagt
                     G - C
                     C - G
                     C - G
                     G - C
                     T + G
                     T - A
                     G - C          T G
                    T     C C C C C     A
        G A        G      | | | | |     A
      C     T T C G       G G G G G     C
      G       | | |                 T T
      G     T A G C
        T A        G     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTTGTGGCTTAGCGGTATAGCGGCTGATTCGTAATCAGCAGGTCGGGGGTTCAAGTC
CCCCCAGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK