The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1609
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 1849204
End posion on genome 1849362
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position
tatgagcaca
tRNA gene sequence
GGGGTCGTGGCCTAGTCCGGCATGGCGACGGGCTCCAGACCCGTCGATCGTGAGTTCAAA
TCTCACCGACCCCAcct
Downstream region at tRNA end position
gttttcataa
Secondary structure (Cloverleaf model)
>At1609	Trp	CCA
                   a      Acct gttttcataa
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C A C T C     A
      T G A        G      | | | | |     A
    C       T C C G       G T G A G     C
    C         | | |                 T T
    G       T G G C
      G C A        G     CGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTCGTGGCCTAGTCCGGCATGGCGACGGGCTCCAGcggtctttgcatccggtgcaga
tgatgacaaatgggtcttctgatttggtgatgatccgttggagcactgatgcatatcgga
gagACCCGTCGATCGTGAGTTCAAATCTCACCGACCCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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