The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1619
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2845256
End posion on genome 2845327
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
tagagcaact
tRNA gene sequence 
GCGTTGATAGTGTAGTGGTTATCACTAGGCGTTGCCAACGCCTAAACCCGGGTTCGAATC
CCGGTCAGCGCActc
Downstream region at tRNA end position 
aattcgtata
Secondary structure (Cloverleaf model)
>At1619	Gly	GCC
                   t      Actc aattcgtata
                     G - C
                     C - G
                     G - C
                     T + G
                     T - A
                     G - C
                     A - T          T A
                    T     G G C C C     A
      T G A        A      | | | | |     G
    G       T G T G       C C G G G     C
    G         | | |                 T T
    T       T C A C
      T A          T     AAAC
                    A - T
                    G - C
                    G - C
                    C - G
                    G - C
                  T       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGTTGATAGTGTAGTGGTTATCACTAGGCGTTGCCAACGCCTAAACCCGGGTTCGAATC
CCGGTCAGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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