The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1632
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 2609678
End posion on genome 2609605
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
taagagcctc
tRNA gene sequence 
GGGCCCGTAGCATAGCCAGGTGGTGCACCCGGCTGATAACCGGGAGGTCATGCGTTCGAA
TCGCATCGGGCCCAttt
Downstream region at tRNA end position 
ctgttttatg
Secondary structure (Cloverleaf model)
>At1632	Ile	GAT
                   c      Attt ctgttttatg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C G C     A
      C G A        A      | | | | |     G
    C       T A C G       A T G C G     C
    A       + | | |                 T T
    G       G T G C
      G T G        A     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCATAGCCAGGTGGTGCACCCGGCTGATAACCGGGAGGTCATGCGTTCGAA
TCGCATCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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