The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1638
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 3068332
End posion on genome 3068248
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
tgttcattga
tRNA gene sequence 
GCGAGGGTATCCGAGCCAGGTCAAAGGAGCAAGGTTGAGGGCCTTGTCGCGAAGGCGTTC
GAGCGTTCAAATCGCTTCCCTCGCAttc
Downstream region at tRNA end position 
ttcttaaaaa
Secondary structure (Cloverleaf model)
>At1638	Leu	GAG
                   a      Attc ttcttaaaaa
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C G C     A
    C C G A        A      + | | | |     A
  A         G C C T       G A G C G     C
  G           | | |                 T T
  G         A G G A
    T C A A        G     TCGCGAAGGCGTTC
                    C - G
                    A - T
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTATCCGAGCCAGGTCAAAGGAGCAAGGTTGAGGGCCTTGTCGCGAAGGCGTTC
GAGCGTTCAAATCGCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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