The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1641
Genome IDCP000254
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanospirillum hungatei JF-1 [CP000254]
Start position on genome 3130953
End posion on genome 3130883
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
tagagcatct
tRNA gene sequence 
GCATCGATGGTCTAGAGGTATGACTTTGGCCTTCCAAGCCAATAGCTCGGGTTCGAATCC
CGATCGGTGCAtaa
Downstream region at tRNA end position 
tcttttctct
Secondary structure (Cloverleaf model)
>At1641	Gly	TCC
                   t      Ataa tcttttctct
                     G - C
                     C - G
                     A - T
                     T + G
                     C - G
                     G - C
                     A - T          T A
                    T     A G C C C     A
        G A        G      | | | | |     G
      A     T C T G       T C G G G     C
      G       | | |                 T T
      G     T G A C
        T A        T     TAGC
                    T - A
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCATCGATGGTCTAGAGGTATGACTTTGGCCTTCCAAGCCAATAGCTCGGGTTCGAATCC
CGATCGGTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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