The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1647
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 21281
End posion on genome 21403
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
gacatggtag
tRNA gene sequence 
GGGACCGTAGGGTAGCTTGGTCCATCCTCCCAGCCCGGGGCGCTGGAGACCCGAGTTCAA
ATCTCGGCGGTCCCAtca
Downstream region at tRNA end position 
aatcgaatcc
Secondary structure (Cloverleaf model)
>At1647	Pro	GGG
                   g      Atca aatcgaatcc
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     G G C T C     A
    T C G A        A      | | | | |     A
  T         T G G G       C C G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        C     AGAC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C*      C
                  C       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCGTAGGGTAGCTTGGTCCATCCTCCCAGCCattgaagaagtttccggacttttca
actggaaCGGGGatggtcagcaccggaaCGCTGGAGACCCGAGTTCAAATCTCGGCGGTC
CCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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