The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1657
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 954020
End posion on genome 954094
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gcttcaaaaa
tRNA gene sequence 
GGGACCATAGGGTAGCTTGGTCGATCCTTTGGGCTTTGGGAGCCTGAGACCCCGGTTCAA
ATCCGGGTGGTCCCAtcc
Downstream region at tRNA end position 
acaaagctta
Secondary structure (Cloverleaf model)
>At1657	Pro	TGG
                   a      Atcc acaaagctta
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     A - T          T A
                    T     G G G C C     A
    T C G A        A      | | | | |     A
  T         T G G G       C C C G G     C
  G           | | +                 T T
  G         T C C T
    T C G A        T     AGAC
                    T + G
                    G + T
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGACCATAGGGTAGCTTGGTCGATCCTTTGGGCTTTGGGAGCCTGAGACCCCGGTTCAA
ATCCGGGTGGTCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK