The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1664
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 1181154
End posion on genome 1181228
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
aaaggaaacg
tRNA gene sequence 
GGGCCCGTAGCCTAGCCAGGATAGGGCATCAGACTCCTAATCTGAAGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGctc
Downstream region at tRNA end position 
aatattctaa
Secondary structure (Cloverleaf model)
>At1664	Arg	CCT
                   g      Gctc aatattctaa
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          A     AGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCCTAGCCAGGATAGGGCATCAGACTCCTAATCTGAAGGTCCCGGGTTCAA
ATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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